Publications (by date)

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Peer-reviewed

2021

Applegate MB, Amelard R, Gómez CA, Roblyer D, "Real-time handheld probe tracking and image formation using digital frequency-domain diffuse optical spectroscopy" IEEE Transactions on Biomedical Engineering (under review), 2021
Applegate MB, Gómez CA, Roblyer D, “Modulation frequency selection and efficient look-up table inversion for Frequency Domain Diffuse Optical Spectroscopy." Journal of Biomedical Optics (in press), 2021
Applegate MB, Spink SS, Roblyer D, “Dual-DMD hyperspectral spatial frequency domain imaging (SFDI) using dispersed broadband illumination with a demonstration of blood stain spectral monitoring," Biomedical Optics Express 12(1): 676, 2021 (link)

2020

Applegate MB, Istfan RE, Spink S, Tank A, Roblyer D, "Recent advances in high speed diffuse optical imaging in biomedicine," APL Photonics 5(4): 040802, 2020 (link)
Applegate MB, Karrobi K, Angelo JP, Austin W, Tabassum SM, Aguénounon E, Tilbury K, Saager RB, Gioux S, Roblyer D, “OpenSFDI: an open-source guide for constructing a spatial frequency domain imaging system,” J. Biomed. Opt. 25(1): 016002, 2020 (link)

2019

Adams DC, Miller AJ, Applegate MB, Cho JL, Hamilos DL, Chee A, Holz JA, Szabari MV, Hariri LP, Harris RS, Griffith JW, Luster AD, Medoff BD, Suter MJ,"Quantitative assessment of airway remodelling and response to allergen in asthma," Respirology 24: 1073, 2019 (link)
Hariri LP, Adams DC, Applegate MB, Miller AJ, Roop BW, Villiger M, Bouma BE, Suter MJ, “Distinguishing Tumor from Associated Fibrosis to Increase Diagnostic Biopsy Yield with Polarization-Sensitive Optical Coherence Tomography" Clinical Cancer Research 25(17): 5242, 2019 (link)

2018

Applegate MB, Zhao Y, Istfan RE, Roblyer D, "Quantitative real-time pulse oximetry with ultrafast frequency-domain diffuse optics and deep neural network processing" Biomedical Optics Express. 9(12): 5997, 2018 (link
Applegate MB, Roblyer D. "Multi-distance diffuse optical spectroscopy with a single optode via hypotrochoidal scanning" Optics Letters. 43(4): 747-50 2018 (link

2017

Applegate MB, Roblyer D. "High-speed spatial frequency domain imaging with temporally modulated light" Journal of Biomedical Optics. 22(7): 076019, 2017. (link)
Franklin AM, Applegate MB, Lewis SM, Omenetto FG. "Stomatopods detect and assess achromatic cues in contests" Behavioral Ecology. 28(5): 1329-36, 2017. (link)
Landry MJ, Applegate MB, Bushuyev OS, Omenetto FG, Kaplan DL, Cronin-Golomb M, Barrett CJ. "Photo-induced structural modification of silk gels containing azobenzene side groups" Soft Matter. 13(16): 2903-6, 2017. (link)
Tseng P, Zhao S, Golding A, Applegate MB, Mitropoulos AN, Kaplan DL, Omenetto FG. "Evaluation of Silk Inverse Opals for ``Smart'' Tissue Culture." ACS Omega 2(2): 470-7 2017. (link)
Tseng P, Napier B, Zhao S, Mitropoulos AN, Applegate MB, Marelli B, Kaplan DL, Omenetto FG. "Directed assembly of bio-inspired hierarchical materials with controlled nanofibrillar architectures." Nature Nanotechnology 12(5):474-80 2017. (link)

2016

Applegate MB, Alonzo C, Georgakoudi I, Kaplan DL, Omenetto FG. "A Simple model of multiphoton micromachining in silk hydrogels." Applied Physics Letters. 108(24):1903 2016. (link)
Applegate MB, Partlow BP, Coburn J, Marelli B, Pirie C, Pineda R, Kaplan DL, Omenetto FG. "Photocrosslinking of silk fibroin using riboflavin for ocular prostheses." Advanced Materials. 28(12): 2417-20 2016. (link)
Zhao S, Chen Y, Partlow BP, Golding AS, Tseng P, Coburn J, Applegate MB, Moreau JE, Omenetto FG, Kaplan DF. "Bio-functionalized silk hydrogel microfluidic systems." Biomaterials. 93: 60-70, 2016. (link)
Brenckle MA, Partlow BP, Tao H, Applegate MB, Reeves A, Paquette M, Marelli B, Kaplan DL, Omenetto FG. "Methods and applications of multilayer silk fibroin laminates based on spatially controlled welding in protein films." Advanced Functional Materials 26(1): 44-50 2016. (link)
Partlow BP, Applegate MB, Omenetto FG, Kaplan DL. "Dityrosine Cross-Linking in Designing Biomaterials." ACS Biomaterials Science & Engineering 2(12): 2108-21 2016. (link)

2015

Applegate MB, Coburn J, Partlow BP, Moreau JE, Mondia J, Marelli B, Kaplan DL, Omenetto FG. "Laser-based 3-dimensional multisacle micropatterning of biocompatible hydrogels for customized tissue engineering scaffolds." Proceedings of the National Academy of Science 112(39): 12052-7, 2015. (link)
Applgate MB, Perotto G, Kaplan DL, Omenetto FG. "Biocompatible silk step-index optical waveguides." Biomedical Optics Express 6(11): 4221-7, 2015. (link)
Mitropoulos A, Marelli B, Ghezzi CE, Applegate MB, Partlow BP, Kaplan DL, Omenetto FG. "Transparent, nanostructured silk fibroin hydrogels with tunable mechanical properties." ACS Biomaterials Science & Engineering. 1(10): 964-70, 2015. (link)

2014

Partlow BP, Hannah CW, Rnjak-Kovacina J, Moreau JE, Applegate MB, Burke KA, Marelli B, Mitropoulos AN, Omenetto FG, Kaplan DL. "Highly Tunable Elastomeric Silk Biomaterials." Advanced Functional Materials 24(29): 4615-24, 2014. (link)

2013

Applegate MB, Marelli B, Kaplan DL, Omenetto FG. "Determination of multiphoton absorption of silk fibroin using the Z-scan technique," Optics Express 21: 29637-42, 2013. (link)
Hariri LP, Mino-Kenudson M, Applegate MB, Eugene MJ, Tearney GJ, Lanuti M, Channick CL, Chee A, Suter MJ. "Towards the guidance of transbronchial biopsy: Identifying pulmonary nodules with optical coherence tomography." CHEST Journal 144(4): 1261-8, 2013. (link)
Hariri LP, Villager M, Applegate MB, Mino-Kenudson M, Mark EJ, Bouma BE, Suter MJ. "Seeing beyond the Bronchoscope to Increase the Diagnostic Yield of Bronchoscopic Biopsy." American journal of respiratory and critical care medicine 187(2): 125-9, 2013. (link)
Hariri LP, Applegate MB, Mino-Kenudson M, Mark EJ, Medoff BD, Luster AD, Bouma BE, Tearney GJ, Suter MJ. "Volumetric optical frequency domain imaging of pulmonary pathology with precise correlation to histopathology." CHEST Journal, 143(1): 64-74, 2013. (link)

2012

Tan KM, Shishkov M, Chee A, Applegate MB, Bouma BE, Suter MJ. "Flexible transbronchial optical frequency domain imaging smart needle for biopsy guidance." Biomedical Optics Express, 3(8): 1947-54, 2012. (link)
Hariri LP, Applegate MB, Mino-Kenudson M, Mark EJ, Bouma BE, Tearney GJ, Suter MJ. "Optical Frequency Domain Imaging of Ex vivo Pulmonary Resection Specimens: Obtaining One to One Image to Histopathology Correlation." Journal of visualized experiments: JoVE, 71, 2012. (link)

Applegate MB, Brenckle MA, Marelli BM, Tao H, Kaplan DL, Omenetto FG. “Silk: A different kind of 'fiber optics',” Optics and Photonics News. June 2014. (link)
Applegate MB, Hariri LP, Beagle J, Tan KM, Chee C, Hales CA, Suter MJ. "Assessment of smoke inhalation injury using volumetric optical frequency domain imaging in sheep models," Proc. of the SPIE 8207, 2012. (link)